Sharon Aviran: search on Z-Library

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1

Vertex characterization of partition polytopes of bipartitions and of planar point sets

Sharon Aviran, Nissan Lev-Tov, Shmuel Onn, Uriel G. Rothblum

Journal:

Discrete Applied Mathematics

Year:

2002

Language:

english

File:

PDF, 159 KB

english, 2002

2

Rational experiment design for sequencing-based RNA structure mapping

Aviran, Sharon, Pachter, Lior

Journal:

Year:

2014

Language:

english

File:

PDF, 1.25 MB

english, 2014

3

[IEEE 2006 IEEE International Symposium on Information Theory - Seattle, WA (2006.7.9-2006.7.9)] 2006 IEEE International Symposium on Information Theory - Optimal Parsing Trees for Run-Length Coding of Biased Data

Aviran, Sharon, Siegel, Paul, Wolf, Jack

Year:

2006

Language:

english

File:

PDF, 225 KB

english, 2006

4

[IEEE 2011 49th Annual Allerton Conference on Communication, Control, and Computing (Allerton) - Monticello, IL, USA (2011.09.28-2011.09.30)] 2011 49th Annual Allerton Conference on Communication, Control, and Computing (Allerton) - RNA structure characterization from chemical mapping experiments

Aviran, Sharon, Lucks, Julius B., Pachter, Lior

Year:

2011

Language:

english

File:

PDF, 993 KB

english, 2011

5

Computational Models of HIV-1 Resistance to Gene Therapy Elucidate Therapy Design Principles

Aviran, Sharon, Shah, Priya S., Schaffer, David V., Arkin, Adam P., Kosakovsky Pond, Sergei L.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.53 MB

english, 2010

6

Modeling and automation of sequencing-based characterization of RNA structure

Sharon Aviran, Cole Trapnell, Julius B. Lucks, Stefanie A. Mortimer, Shujun Luo, Gary P. Schroth, Jennifer A. Doudna, Adam P. Arkin and Lior Pachter

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.03 MB

english, 2011

7

Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

Julius B. Lucks, Stefanie A. Mortimer, Cole Trapnell, Shujun Luo, Sharon Aviran, Gary P. Schroth, Lior Pachter, Jennifer A. Doudna and Adam P. Arkin

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.27 MB

english, 2011

8

Data-directed RNA secondary structure prediction using probabilistic modeling

Deng, Fei, Ledda, Mirko, Vaziri, Sana, Aviran, Sharon

Journal:

Year:

2016

Language:

english

File:

PDF, 435 KB

english, 2016

9

[IEEE 2012 46th Asilomar Conference on Signals, Systems and Computers - Pacific Grove, CA, USA (2012.11.4-2012.11.7)] 2012 Conference Record of the Forty Sixth Asilomar Conference on Signals, Systems and Computers (ASILOMAR) - Session TA7b: Sequence and genome analysis (partially invited) [breaker page]

Year:

2012

File:

PDF, 52 KB

2012

10

Metrics for rapid quality control in RNA structure probing experiments

Choudhary, Krishna, Shih, Nathan P., Deng, Fei, Ledda, Mirko, Li, Bo, Aviran, Sharon

Journal:

Year:

2016

Language:

english

File:

PDF, 1.01 MB

english, 2016

11

FoldAtlas: a repository for genome-wide RNA structure probing data

Norris, Matthew, Cheema, Jitender, Kwok, Chun Kit, Hartley, Matthew, Morris, Richard J, Aviran, Sharon, Ding, Yiliang

Journal:

Year:

2016

Language:

english

File:

PDF, 235 KB

english, 2016

12

SEQualyzer: Interactive tool for quality control and exploratory analysis of high-throughput RNA structural profiling data

Choudhary, Krishna, Ruan, Luyao, Deng, Fei, Shih, Nathan, Aviran, Sharon

Journal:

Year:

2016

Language:

english

File:

PDF, 256 KB

english, 2016

13

Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions

Choudhary, Krishna, Deng, Fei, Aviran, Sharon

Journal:

Quantitative Biology

Year:

2017

Language:

english

File:

PDF, 636 KB

english, 2017

14

PROBer Provides a General Toolkit for Analyzing Sequencing-Based Toeprinting Assays

Li, Bo, Tambe, Akshay, Aviran, Sharon, Pachter, Lior

Journal:

Year:

2017

Language:

english

File:

PDF, 1.56 MB

english, 2017

15

Probing of RNA structures in a positive sense RNA virus reveals selection pressures for structural elements

Watters, Kyle E, Choudhary, Krishna, Aviran, Sharon, Lucks, Julius B, Perry, Keith L, Thompson, Jeremy R

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 714 KB

english, 2017

16

Statistical modeling of RNA structure profiling experiments enables parsimonious reconstruction of structure landscapes

Li, Hua, Aviran, Sharon

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.30 MB

english, 2018

17

Publisher Correction: Statistical modeling of RNA structure profiling experiments enables parsimonious reconstruction of structure landscapes

Li, Hua, Aviran, Sharon

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 261 KB

english, 2018

18

PATTERNA: transcriptome-wide search for functional RNA elements via structural data signatures

Ledda, Mirko, Aviran, Sharon

Journal:

Year:

2018

Language:

english

File:

PDF, 2.49 MB

english, 2018

19

Automated Recognition of RNA Structure Motifs by Their SHAPE Data Signatures

Radecki, Pierce, Ledda, Mirko, Aviran, Sharon

Journal:

Year:

2018

Language:

english

File:

PDF, 1.41 MB

english, 2018

20

Extracting information from RNA SHAPE data: Kalman filtering approach

Vaziri, Sana, Koehl, Patrice, Aviran, Sharon, Barash, Danny

Journal:

Year:

2018

Language:

english

File:

PDF, 1.62 MB

english, 2018

21

dStruct: identifying differentially reactive regions from RNA structurome profiling data

Choudhary, Krishna, Lai, Yu-Hsuan, Tran, Elizabeth J., Aviran, Sharon

Journal:

Year:

2019

Language:

english

File:

PDF, 1.42 MB

english, 2019

22

Genome-Wide Discovery of DEAD-Box RNA Helicase Targets Reveals RNA Structural Remodeling in Transcription Termination

Lai, Yu-Hsuan, Choudhary, Krishna, Cloutier, Sara C., Xing, Zheng, Aviran, Sharon, Tran, Elizabeth J.

Journal:

Year:

2019

Language:

english

File:

PDF, 10.58 MB

english, 2019

23

Stability and nuclear localization of yeast telomerase depend on protein components of RNase P/MRP

Garcia, P. Daniela, Leach, Robert W., Wadsworth, Gable M., Choudhary, Krishna, Li, Hua, Aviran, Sharon, Kim, Harold D., Zakian, Virginia A.

Journal:

Nature Communications

Year:

2020

File:

PDF, 3.00 MB

2020

24

Maxillofacial trauma following road accidents â an 11âyear multiâcenter study in Israel

Einy, Shmuel, Goldman, Sharon, Radomislensky, Irina, Bodas, Moran, Peleg, Kobi, Acker, A., Aviran, N., Bahouth, H., Bar, A., Becker, A., Ben Ely, M., Fadeev, D., Grevtsev, I., Jeroukhimov, I., Kedar,

Journal:

Dental Traumatology

Year:

2020

File:

PDF, 8.15 MB

2020